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1

Multi-criteria Remote Asynchronous Group Decision Screening: An Experimental Study

Efremov, Roman V., Lotov, Alexander V.

Journal:

Group Decision and Negotiation

Year:

2014

Language:

english

File:

PDF, 406 KB

english, 2014

2

Deciphering Fine Molecular Details of Proteins’ Structure and Function with a Protein Surface Topography (PST) Method

Koromyslova, Anna D., Chugunov, Anton O., Efremov, Roman G.

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 8.68 MB

english, 2014

3

An experimental study of a web-based framework for group decision support with applications to participatory budget elaboration

Efremov, Roman, Insua, David Rios

Journal:

International Journal of Technology Policy and Management

Year:

2007

Language:

english

File:

PDF, 359 KB

english, 2007

4

A Fragment-Based Scoring Function to Re-rank ATP Docking Results

Pyrkov, Timothy, Efremov, Roman

Journal:

International Journal of Molecular Sciences

Year:

2007

File:

PDF, 346 KB

2007

5

Prediction of rejection properties and performance of nanofiltration membranes based on scaling prognosis in drinking water treatment

Journal:

IOP Conference Series Materials Science and Engineering

Year:

2020

File:

PDF, 926 KB

2020

6

Pyrenemethyl ara-Uridine-2′-carbamate: A Strong Interstrand Excimer in the Major Groove of a DNA Duplex

Natalia N. Dioubankova, Andrei D. Malakhov, Dmitry A. Stetsenko, Michael J. Gait, Pavel E. Volynsky, Roman G. Efremov, Vladimir A. Korshun

Journal:

Year:

2003

Language:

english

File:

PDF, 163 KB

english, 2003

7

Development of the force field parameters for phosphoimidazole and phosphohistidine

Yuri A. Kosinsky, Pavel E. Volynsky, Philippe Lagant, Gerard Vergoten, Ei-Ichiro Suzuki, Alexander S. Arseniev, Roman G. Efremov

Journal:

Journal of Computational Chemistry

Year:

2004

Language:

english

File:

PDF, 164 KB

english, 2004

8

Homology modeling of MT1 and MT2 receptors

Amaury Farce, Anton O. Chugunov, Cédric Logé, Ahmed Sabaouni, Saïd Yous, Sébastien Dilly, Nicolas Renault, Gérard Vergoten, Roman G. Efremov, Daniel Lesieur, Philippe Chavatte

Journal:

European Journal of Medicinal Chemistry

Year:

2008

Language:

english

File:

PDF, 3.05 MB

english, 2008

9

A new solution for the Caspian Sea desalination: low-pressure membranes

Alexei G. Pervov, Alexei P. Andrianov, Roman V Efremov, Andrey V. Desyatov, Alexei E Baranov

Journal:

Year:

2003

Language:

english

File:

PDF, 566 KB

english, 2003

10

Complementarity of hydrophobic properties in ATP-protein binding: A new criterion to rank docking solutions

Timothy V. Pyrkov, Yuri A. Kosinsky, Alexander S. Arseniev, John P. Priestle, Edgar Jacoby, Roman G. Efremov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 243 KB

english, 2007

11

Specificity of helix packing in transmembrane dimer of the cell death factor BNIP3: A molecular modeling study

Yana A. Vereshaga, Pavel E. Volynsky, Julia E. Pustovalova, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.16 MB

english, 2007

12

Calculation of supercavitational flow past slender profiles in proximity to the separation boundary

I. I. Efremov, V. M. Roman

Journal:

Journal of Applied Mechanics and Technical Physics

Year:

1969

Language:

english

File:

PDF, 321 KB

english, 1969

13

Application of three-dimensional molecular hydrophobicity potential to the analysis of spatial organization of membrane domains in proteins: I. Hydrophobic properties of transmembrane segments of Na+, K+-ATPase

Roman G. Efremov, Dmitry I. Gulyaev, Gerard Vergoten, Nikolai N. Modyanov

Journal:

The Protein Journal

Year:

1992

Language:

english

File:

PDF, 1.08 MB

english, 1992

14

Application of three-dimensional molecular hydrophobicity potential to the analysis of spatial organization of membrane protein domains. II. Optimization of hydrophobic contacts in transmembrane hairpin structures of Na+, K+-ATPase

Roman G. Efremov, Dmitry I. Gulyaev, Nikolai N. Modyanov

Journal:

The Protein Journal

Year:

1992

Language:

english

File:

PDF, 903 KB

english, 1992

15

Application of three-dimensional molecular hydrophobicity potential to the analysis of spatial organization of membrane domains in proteins. III. Modeling of intramembrane moiety of Na+, K+-ATPase

Roman G. Efremov, Dmitry I. Gulyaev, Nikolai N. Modyanov

Journal:

The Protein Journal

Year:

1993

Language:

english

File:

PDF, 863 KB

english, 1993

16

Hydrophobic organization of α-helix membrane bundle in bacteriorhodopsin

Roman G. Efremov, Gérard Vergoten

Journal:

The Protein Journal

Year:

1996

Language:

english

File:

PDF, 1.04 MB

english, 1996

17

Implicit two-phase solvation model as a tool to assess conformation and energetics of proteins in membrane-mimetic media

Roman Efremov, Pavel Volynsky, Dmitry Nolde, Gérard Vergoten, Alexander Arseniev

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2001

Language:

english

File:

PDF, 236 KB

english, 2001

18

Assessment of conformation and energetics of the N-terminal part of elafin via computer simulations

Roman G. Efremov, Pavel E. Volynsky, Manuel A. M. Dauchez, Dmitry E. Nolde, Alexander S. Arseniev, Alain J. P. Alix

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2001

Language:

english

File:

PDF, 205 KB

english, 2001

19

A new “hydrophobic template” method detects segments forming transmembrane α-helical bundles in ion channels

Roman G. Efremov, Gérard Vergoten, Alexander S. Arseniev

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

1999

Language:

english

File:

PDF, 186 KB

english, 1999

20

Peptides in membranes: assessment of environmental effects via simulations using an implicit solvation model

Roman G. Efremov, Dmitry E. Nolde, Gérard Vergoten, Alexander S. Arseniev

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

1999

Language:

english

File:

PDF, 286 KB

english, 1999

21

Interfacing capillary electrophoresis and surface-enhanced resonance Raman spectroscopy for the determination of dye compounds

D. Arráez Román, E. Efremov, F. Ariese, A. Segura Carretero, C. Gooijer

Journal:

Analytical and Bioanalytical Chemistry

Year:

2005

Language:

english

File:

PDF, 298 KB

english, 2005

22

Properties of a method for polyhedral approximation of

Roman V. Efremov, Georgy K. Kamenev

Journal:

Annals of Operations Research

Year:

2009

Language:

english

File:

PDF, 301 KB

english, 2009

23

Association of transmembrane helices: what determines assembling of a dimer?

Roman G. Efremov, Yana A. Vereshaga, Pavel E. Volynsky, Dmitry E. Nolde, Alexander S. Arseniev

Journal:

Journal of Computer-Aided Molecular Design

Year:

2006

Language:

english

File:

PDF, 525 KB

english, 2006

24

A framework for participatory decision support using Pareto frontier visualization, goal identification and arbitration

Roman Efremov, David Rios Insua, Alexander Lotov

Journal:

European Journal of Operational Research

Year:

2009

Language:

english

File:

PDF, 369 KB

english, 2009

25

Human Copper-Transporting ATPase ATP7B (The Wilson's Disease Protein): Biochemical Properties and Regulation

Svetlana Lutsenko, Roman G. Efremov, Ruslan Tsivkovskii, Joel M. Walker

Journal:

Journal of Bioenergetics and Biomembranes

Year:

2002

Language:

english

File:

PDF, 565 KB

english, 2002

26

Role of Lipid Charge in Organization of Water/Lipid Bilayer Interface: Insights via Computer Simulations

Polyansky, Anton A., Volynsky, Pavel E., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 750 KB

english, 2005

27

Atomic-scale lateral heterogeneity and dynamics of two-component lipid bilayers composed of saturated and unsaturated phosphatidylcholines

Pyrkova, Darya V., Tarasova, Natalya K., Pyrkov, Timothy V., Krylov, Nikolay A., Efremov, Roman G.

Journal:

Year:

2011

Language:

english

File:

PDF, 399 KB

english, 2011

28

Simulation and multicriteria optimization modeling approach for regional water restoration management

Udías, Angel, Efremov, Roman, Galbiati, Lorenzo, Cañamón, Israel

Journal:

Annals of Operations Research

Year:

2014

Language:

english

File:

PDF, 870 KB

english, 2014

29

Human chemokine receptors CCR5, CCR3 and CCR2B share common polarity motif in the first extracellular loop with other human G-protein coupled receptors : Implications for HIV-1 coreceptor function

Roman Efremov, Marie-José Truong, Edith Christine A. Darcissac, Jin Zeng, Odile Grau, Gérard Vergoten, Christine Debard, André Capron, George M. Bahr

Journal:

Year:

1999

Language:

english

File:

PDF, 1009 KB

english, 1999

30

Multistate Organization of Transmembrane Helical Protein Dimers Governed by the Host Membrane

Polyansky, Anton A., Volynsky, Pavel E., Efremov, Roman G.

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 1.89 MB

english, 2012

31

Quantitative Treatment of UV Resonance Raman Spectra of Biological Molecules: Application to the Study of Membrane-Bound Proteins

Efremov, Roman G., Feofanov, Alexey V., Nabiev, Igor R.

Journal:

Applied Spectroscopy

Year:

1991

Language:

english

File:

PDF, 686 KB

english, 1991

32

How broadly tuned olfactory receptors equally recognize their agonists. Human OR1G1 as a test case

Charlier, Landry, Topin, Jérémie, Ronin, Catherine, Kim, Soo-Kyung, Goddard, William A., Efremov, Roman, Golebiowski, Jérôme

Journal:

Cellular and Molecular Life Sciences

Year:

2012

Language:

english

File:

PDF, 537 KB

english, 2012

33

Adaptation of a Membrane-active Peptide to Heterogeneous Environment. II. The Role of Mosaic Nature of the Membrane Surface

Polyansky, Anton A., Volynsky, Pavel E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 879 KB

english, 2009

34

Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane

Polyansky, Anton A., Ramaswamy, Rajesh, Volynsky, Pavel E., Sbalzarini, Ivo F., Marrink, Siewert J., Efremov, Roman G.

Journal:

The Journal of Physical Chemistry Letters

Year:

2010

Language:

english

File:

PDF, 3.55 MB

english, 2010

35

Amino acid residue: is it structural or functional?

Alexander P. Golovanov, Roman G. Efremov, Victor A. Jaravine, Gérard Vergoten, Alexander S. Arseniev

Journal:

Year:

1995

Language:

english

File:

PDF, 502 KB

english, 1995

36

Linker and/or transmembrane regions of influenza A/Group-1, A/Group-2, and type B virus hemagglutinins are packed differently within trimers

Larisa V. Kordyukova, Marina V. Serebryakova, Anton A. Polyansky, Ekaterina A. Kropotkina, Andrei V. Alexeevski, Michael Veit, Roman G. Efremov, Irina Yu. Filippova, Lyudmila A. Baratova

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2011

Language:

english

File:

PDF, 1.92 MB

english, 2011

37

Monte Carlo simulations of voltage-driven translocation of a signal sequence

Roman G Efremov, Pavel E Volynsky, Dmitry E Nolde, Annemieke van Dalen, Ben de Kruijff, Alexander S Arseniev

Journal:

Year:

2002

Language:

english

File:

PDF, 138 KB

english, 2002

38

Spatial structure of the M2 transmembrane segment of the nicotinic acetylcholine receptor α-subunit

Vladimir S Pashkov, Innokenty V Maslennikov, Leonid D Tchikin, Roman G Efremov, Vadim T Ivanov, Alexander S Arseniev

Journal:

Year:

1999

Language:

english

File:

PDF, 227 KB

english, 1999

39

Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin

Roman G. Efremov, Dmitry E. Nolde, Pavel E. Volynsky, Andrei A. Chernyavsky, Peter V. Dubovskii, Alexander S. Arseniev

Journal:

Year:

1999

Language:

english

File:

PDF, 298 KB

english, 1999

40

Dynamic clustering of lipids in hydrated two-component membranes: results of computer modeling and putative biological impact

Pyrkova, Darya V., Tarasova, Natalya K., Krylov, Nikolay A., Nolde, Dmitry E., Pentkovsky, Vladimir M., Efremov, Roman G.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 290 KB

english, 2013

41

Fusion Peptide Interaction with Lipid Bilayer: Modeling with Monte Carlo Simulation and Continuum Electrostatics Calculation

Kosinsky, Yuri A., Dubovskii, Peter V., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Molecular Simulation

Year:

2000

Language:

english

File:

PDF, 533 KB

english, 2000

42

Dissecting structural basis of the unique substrate selectivity of human enteropeptidase catalytic subunit

Ostapchenko, Valeriy G., Gasparian, Marine E., Kosinsky, Yurij A., Efremov, Roman G., Dolgikh, Dmitry A., Kirpichnikov, Mikhail P.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2012

Language:

english

File:

PDF, 444 KB

english, 2012

43

Interaction of Cardiotoxins with Membranes: A Molecular Modeling Study

Efremov, Roman G., Volynsky, Pavel E., Nolde, Dmitry E., Dubovskii, Peter V., Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 413 KB

english, 2002

44

Left-Handed Dimer of EphA2 Transmembrane Domain: Helix Packing Diversity among Receptor Tyrosine Kinases

Bocharov, Eduard V., Mayzel, Maxim L., Volynsky, Pavel E., Mineev, Konstantin S., Tkach, Elena N., Ermolyuk, Yaroslav S., Schulga, Alexey A., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 771 KB

english, 2010

45

Specific Membrane Binding of Neurotoxin II Can Facilitate Its Delivery to Acetylcholine Receptor

Lesovoy, Dmitry M., Bocharov, Eduard V., Lyukmanova, Ekaterina N., Kosinsky, Yurij A., Shulepko, Mikhail A., Dolgikh, Dmitry A., Kirpichnikov, Mikhail P., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 829 KB

english, 2009

46

A Solvent Model for Simulations of Peptides in Bilayers. II. Membrane-Spanning α-Helices

Efremov, Roman G., Nolde, Dmitry E., Vergoten, Gérard, Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 332 KB

english, 1999

47

A Solvent Model for Simulations of Peptides in Bilayers. I. Membrane-Promoting α-Helix Formation

Efremov, Roman G., Nolde, Dmitry E., Vergoten, Gérard, Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 244 KB

english, 1999

48

Architecture of the Sodium Pump Molecule : Vectorial Labeling and Computer Modeling

NIKOLAI N. MODYANOV, NATALIA M. VLADIMIROVA, DMITRY I. GULYAEV, ROMAN G. EFREMOV

Journal:

Annals of the New York Academy of Sciences

Year:

1992

Language:

english

File:

PDF, 754 KB

english, 1992

49

Adaptation of a Membrane-active Peptide to Heterogeneous Environment. I. Structural Plasticity of the Peptide

Polyansky, Anton A., Volynsky, Pavel E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 2.00 MB

english, 2009

50

A New Method to Characterize Hydrophobic Organization of Proteins: Application to Rational Protein Engineering of Barnase

Golovanov, Alexander P., Efremov, Roman G., Jaravine, Victor A., Vergoten, Gérard, Kirpichnikov, Mikhail P., Arseniev, Alexander S.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1998

Language:

english

File:

PDF, 1.18 MB

english, 1998

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